PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G021500.1
Common NameB456_006G021500, LOC105797821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 102aa    MW: 11442.5 Da    PI: 10.554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G021500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-0626651354
                        HHHHHHHH.HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 13 RdriNsaf.eeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        R++ N+ f  +Lrell ++   ++kK + a  L +++++Ik+L
  Gorai.006G021500.1 26 RSNENEDFsLRLRELLSTN---KKKKRNAAKLLDETCNHIKKL 65
                        66667777679********...*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-52680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-63582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSKRSSGRS NERSSGRSNE RSSGSRSNEN EDFSLRLREL LSTNKKKKRN AAKLLDETCN  60
HIKKLNGEVD DLSNRISELL NSSETESSNI NANILRQFLQ Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483183.14e-63PREDICTED: transcription factor PRE3-like
TrEMBLA0A0D2RP294e-63A0A0D2RP29_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506134
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]